PRAGMA 29

October 5 - 7

International Workshop on Building Collaborations in Biodiversity Informatics

October 7

Student Session Lightning Talks

• Breaking the Trade-off between Performance and Reliability in Network Storage System, Hiroki Ohtsuji
• Performance Analysis of Virtual Machine and Container for Cloud Based High Performance Computing Platform, Irfan Fadhila
• Distributed scheme of dynamic entropy based method for early detection of anomalous states in sensor network, Arya Adhyaksa Waskita
• Autodock Aplication Integration into SCLOUD Web Interface, Rizki Putra
• Adjacency Hyperedges Matrix, A Hypergraph Model for Constructing Composite Object Relationship, Soetrisno Cahya
• Virtual Screening and Moleculer Docking of Indonesian Herbal Database Based Pharmacopore Approached for Identification SIRT1 Inhibitor as Potential Ligand Active, Andika
• Proposal of indoor evacuation system with smartphones, Takuya Yamada
• An MPI concept with efficient control of network functionality based on SDN, Khureltulga Dashdavaa
• 3D Pharmacophore Virtual Screening of Indonesia`s Medicinal Plants Database for SIRT1 Activator, Azminah Mamur
• Virtual Screening of Indonesian Herbal Database as an Active Ligand for HDAC4 and HDAC7 based on Pharmacophore Approached, Linda Erlina
• Design and Analysis GPU Computing for Molecular Dynamics, Denny Hermawan
• Evaluation of Topology-based OpenFlow Controller for Multipath TCP on PRAGMA-ENT, Chawanat Nakasan
• An implementation of SAGE Bridge for sharing visualized contents on multiple tiled display wall systems, Arata Endo

October 8

• 09.00-09.30 Welcome remark and introduction, Chair Heru Suhartanto, (Universitas Indonesia)
  • Opening speech by General Chair: Heru Suhartanto
  • Opening speech by PRAGMA Chair: Peter Arzberger
  • Opening speech by Dean of Faculty of Computer
    Science Universitas Indonesia: Mirna Adriani, Ph.D
  • Opening speech by Rector of Universitas Indonesia, Prof. Muhammad Anis
• 09.30-09.50 Update since PRAGMA 28, Peter Arzberger (UCSD, USA)

• 09.50-10.40 Invited Speaker: Dr. Eng Wisnu Jatmiko (Faculty of Computer Science,
  Universitas Indonesia) and dr. Budi Wiweko, MD, OG
  (REI), Ph.D (Faculty of Medicine, Universitas Indonesia).
  The current Tele-Health Research and Development at UI

• 11.10-12.30 Working Group updates
• 14.00-15.30 Working Groups breakout Session
  • Resources: PRAGMA ENT report
  • Bioscience: Biodiversity, Lake Ecology
  • Telescience
  • Cyberlearning
• 16.00-17.00 Student best Lightning talks
• 17.00-18.00 ICDS best papers talks, Chairs Beth Plale (Indiana University, USA), Miao Chen (Indiana University, USA)
  • Lightweight Scheduling for the PRAGMA Cloud Testbed
  • PRAGMA-ENT: Exposing SDN Concepts to Domain Scientists in the Pacific Rim
  • Virtualizing LIfemapper Software Infrastructure for Biodiversity Expedition

October 9

• 09.00-09.10 Opening remarks, Heru Suhartanto (Universitas Indonesia)
• 09.10-09.35 Invited speaker: Dr. Rifki Sadikin, Bioinformatics/High Performance Computing Lab, Indonesia Institute of Science (LIPI).

• 09.35-10.00 Invited speaker: Dr. dr. Andri Lubis, Head of Research Department, RSPUN (National General Hospital), Dr. Cipto Mangunkusumo, Challenges and future outlooks of ICT related research at Indonesia Hospitals.

• 10.30-12.00 Working Group Breakout session
  • Resources
  • Bioscience, Biodiversity and Lake Ecology
  • Telescience
  • Cyberlearning

• 12.00-14.00 PRAGMA Steering Committee meeting, Peter Arzberger

• 14.00-16.30 Demo/presentation session
  • [Hydra: A Browser-based Tool for Virtual Screening Data], Haga Jason (demo)
  • Development of a Multi-site Disaster Management Tool, Haga Jason (demo)
  • Utilization of KNApSAcK Family Databases for Developing Herbal Medicine Systems, Wijaya Sony Hartono
  • Molecular Dynamics Analysis of Palmitic Acid in Deep Eutectic Solvents of Betaine and Glycerol, Syahriar Arry Yanuar
  • Lightweight Scheduling for the PRAGMA Cloud Testbed Smallen Shava (demo)
  • PRAGMA Lake Expedition Cyberinfrastructure, Figueiredo Renato, (demo)
  • IPOP Overlay Networks for Data Sharing and Virtual Clusters in PRAGMA, Figueiredo Renato (demo)
• 16.30-16.50 Poster session
• 16.50-17.50 Working group updates
  • Resources
  • Bioscience
  • Telescience
  • Cyberlearning
  • Students
• 17.50-18.10
  • Executive Committee Meeting Summary, (Peter Arzberger)
  • US-East Asia Collaborations to Enable Transnation Cyberinfrastructure Applications (CENTRA), Jose Fortes
  • Wrap up, PRAGMA 29 General Chair
  • Welcome by PRAGMA 30 organizers, Jelina Tetangco, Advanced Science and Technology Institute, PH